Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.
Identifieur interne : 001E52 ( Main/Exploration ); précédent : 001E51; suivant : 001E53Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.
Auteurs : Tatiana A. Vishnivetskaya [États-Unis] ; Scott D. Hamilton-Brehm ; Mircea Podar ; Jennifer J. Mosher ; Anthony V. Palumbo ; Tommy J. Phelps ; Martin Keller ; James G. ElkinsSource :
- Microbial ecology [ 1432-184X ] ; 2015.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ADN des archées (génétique), ARN ribosomique 16S (génétique), Analyse de séquence d'ADN (MeSH), Archéobactéries (classification), Archéobactéries (génétique), Archéobactéries (isolement et purification), Bactéries (classification), Bactéries (génétique), Bactéries (isolement et purification), Biocarburants (MeSH), Biomasse (MeSH), Cellulose (composition chimique), Clonage moléculaire (MeSH), Lignine (composition chimique), Masse moléculaire (MeSH), Phylogenèse (MeSH), Phylogéographie (MeSH), Populus (composition chimique), Populus (microbiologie), Sources thermales (microbiologie), Température élevée (MeSH), Wyoming (MeSH), Xylanes (composition chimique).
- MESH :
- composition chimique : Archéobactéries, Bactéries, Cellulose, Lignine, Populus, Xylanes.
- génétique : ADN bactérien, ADN des archées, ARN ribosomique 16S, Archéobactéries, Bactéries.
- isolement et purification : Archéobactéries, Bactéries.
- microbiologie : Populus, Sources thermales.
- Analyse de séquence d'ADN, Biocarburants, Biomasse, Clonage moléculaire, Masse moléculaire, Phylogenèse, Phylogéographie, Température élevée, Wyoming.
English descriptors
- KwdEn :
- Archaea (classification), Archaea (genetics), Archaea (isolation & purification), Bacteria (classification), Bacteria (genetics), Bacteria (isolation & purification), Biofuels (MeSH), Biomass (MeSH), Cellulose (chemistry), Cloning, Molecular (MeSH), DNA, Archaeal (genetics), DNA, Bacterial (genetics), Hot Springs (microbiology), Hot Temperature (MeSH), Lignin (chemistry), Molecular Weight (MeSH), Phylogeny (MeSH), Phylogeography (MeSH), Populus (chemistry), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Wyoming (MeSH), Xylans (chemistry).
- MESH :
- chemical , chemistry : Cellulose, Lignin, Xylans.
- chemical , genetics : DNA, Archaeal, DNA, Bacterial, RNA, Ribosomal, 16S.
- chemical : Biofuels.
- geographic : Wyoming.
- chemistry : Populus.
- classification : Archaea, Bacteria.
- genetics : Archaea, Bacteria.
- isolation & purification : Archaea, Bacteria.
- microbiology : Hot Springs, Populus.
- Biomass, Cloning, Molecular, Hot Temperature, Molecular Weight, Phylogeny, Phylogeography, Sequence Analysis, DNA.
Abstract
The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this study, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55-85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.
DOI: 10.1007/s00248-014-0500-8
PubMed: 25319238
Affiliations:
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Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this study, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55-85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25319238</PMID><DateCompleted><Year>2015</Year><Month>10</Month><Day>14</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-184X</ISSN><JournalIssue CitedMedium="Internet"><Volume>69</Volume><Issue>2</Issue><PubDate><Year>2015</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Microbial ecology</Title><ISOAbbreviation>Microb Ecol</ISOAbbreviation></Journal><ArticleTitle>Community analysis of plant biomass-degrading microorganisms from Obsidian Pool, Yellowstone National Park.</ArticleTitle><Pagination><MedlinePgn>333-45</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00248-014-0500-8</ELocationID><Abstract><AbstractText>The conversion of lignocellulosic biomass into biofuels can potentially be improved by employing robust microorganisms and enzymes that efficiently deconstruct plant polysaccharides at elevated temperatures. Many of the geothermal features of Yellowstone National Park (YNP) are surrounded by vegetation providing a source of allochthonic material to support heterotrophic microbial communities adapted to utilize plant biomass as a primary carbon and energy source. In this study, a well-known hot spring environment, Obsidian Pool (OBP), was examined for potential biomass-active microorganisms using cultivation-independent and enrichment techniques. Analysis of 33,684 archaeal and 43,784 bacterial quality-filtered 16S rRNA gene pyrosequences revealed that archaeal diversity in the main pool was higher than bacterial; however, in the vegetated area, overall bacterial diversity was significantly higher. Of notable interest was a flooded depression adjacent to OBP supporting a stand of Juncus tweedyi, a heat-tolerant rush commonly found growing near geothermal features in YNP. The microbial community from heated sediments surrounding the plants was enriched in members of the Firmicutes including potentially (hemi)cellulolytic bacteria from the genera Clostridium, Anaerobacter, Caloramator, Caldicellulosiruptor, and Thermoanaerobacter. Enrichment cultures containing model and real biomass substrates were established at a wide range of temperatures (55-85 °C). Microbial activity was observed up to 80 °C on all substrates including Avicel, xylan, switchgrass, and Populus sp. Independent of substrate, Caloramator was enriched at lower (<65 °C) temperatures while highly active cellulolytic bacteria Caldicellulosiruptor were dominant at high (>65 °C) temperatures.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vishnivetskaya</LastName><ForeName>Tatiana A</ForeName><Initials>TA</Initials><AffiliationInfo><Affiliation>BioEnergy Science Center, Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hamilton-Brehm</LastName><ForeName>Scott D</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>Podar</LastName><ForeName>Mircea</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Mosher</LastName><ForeName>Jennifer J</ForeName><Initials>JJ</Initials></Author><Author ValidYN="Y"><LastName>Palumbo</LastName><ForeName>Anthony V</ForeName><Initials>AV</Initials></Author><Author ValidYN="Y"><LastName>Phelps</LastName><ForeName>Tommy J</ForeName><Initials>TJ</Initials></Author><Author ValidYN="Y"><LastName>Keller</LastName><ForeName>Martin</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Elkins</LastName><ForeName>James G</ForeName><Initials>JG</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType><PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>10</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Microb Ecol</MedlineTA><NlmUniqueID>7500663</NlmUniqueID><ISSNLinking>0095-3628</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D056804">Biofuels</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019641">DNA, Archaeal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014990">Xylans</NameOfSubstance></Chemical><Chemical><RegistryNumber>11132-73-3</RegistryNumber><NameOfSubstance UI="C036909">lignocellulose</NameOfSubstance></Chemical><Chemical><RegistryNumber>9004-34-6</RegistryNumber><NameOfSubstance UI="D002482">Cellulose</NameOfSubstance></Chemical><Chemical><RegistryNumber>9005-53-2</RegistryNumber><NameOfSubstance UI="D008031">Lignin</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001105" MajorTopicYN="N">Archaea</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D056804" MajorTopicYN="N">Biofuels</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018533" MajorTopicYN="Y">Biomass</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002482" MajorTopicYN="N">Cellulose</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003001" MajorTopicYN="N">Cloning, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019641" MajorTopicYN="N">DNA, Archaeal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D045482" MajorTopicYN="N">Hot Springs</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006358" MajorTopicYN="N">Hot Temperature</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008031" MajorTopicYN="N">Lignin</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008970" MajorTopicYN="N">Molecular Weight</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014959" MajorTopicYN="N" Type="Geographic">Wyoming</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014990" 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IdType="pubmed">19820143</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><noCountry><name sortKey="Elkins, James G" sort="Elkins, James G" uniqKey="Elkins J" first="James G" last="Elkins">James G. Elkins</name><name sortKey="Hamilton Brehm, Scott D" sort="Hamilton Brehm, Scott D" uniqKey="Hamilton Brehm S" first="Scott D" last="Hamilton-Brehm">Scott D. Hamilton-Brehm</name><name sortKey="Keller, Martin" sort="Keller, Martin" uniqKey="Keller M" first="Martin" last="Keller">Martin Keller</name><name sortKey="Mosher, Jennifer J" sort="Mosher, Jennifer J" uniqKey="Mosher J" first="Jennifer J" last="Mosher">Jennifer J. Mosher</name><name sortKey="Palumbo, Anthony V" sort="Palumbo, Anthony V" uniqKey="Palumbo A" first="Anthony V" last="Palumbo">Anthony V. Palumbo</name><name sortKey="Phelps, Tommy J" sort="Phelps, Tommy J" uniqKey="Phelps T" first="Tommy J" last="Phelps">Tommy J. Phelps</name><name sortKey="Podar, Mircea" sort="Podar, Mircea" uniqKey="Podar M" first="Mircea" last="Podar">Mircea Podar</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Vishnivetskaya, Tatiana A" sort="Vishnivetskaya, Tatiana A" uniqKey="Vishnivetskaya T" first="Tatiana A" last="Vishnivetskaya">Tatiana A. Vishnivetskaya</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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